rs6458066 chr6:38720522 C>T
- Sequence
accgaggcaaacccaggcttaagc[C/T]gacatctagtgctggaaatgagtc
- ASB in cell types
- foreskin keratinocyte K562 (myelogenous leukemia) epithelial cell of prostate HMEC (human mammary epithelial cells)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN STAG2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.78 | 2.00 | 1.99 | -0.37 | Weak Discordant | |||
| STAG1_HUMAN | -0.72 | 1.40 | 2.30 | n/a | n/a | |||
| STAG2_HUMAN | -2.52 | 2.62 | 1.00 | n/a | n/a |
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Motif analysis
