rs6461248 chr7:16398732 A>G

Sequence
acacgtgggtgacacgtgaccaac[A/G]cttaaccaatgcctgacatgtgac
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
USF2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
USF2_HUMAN n/a 2.45 1.001.9·10-19 2.00 1.21 Weak Concordant
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Motif analysis

USF2_HUMAN Weak Concordant
USF2_HUMAN pic

Genetic associations

GRASP hypertension (early onset hypertension),  total cholesterol
GTEx eQTL Adipose_Visceral_Omentum,  Artery_Tibial,  Brain_Caudate_basal_ganglia,  Cells_Cultured_fibroblasts,  Esophagus_Muscularis,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid

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