rs6463055 chr7:41881894 T>C
- Sequence
aaatatattcgcaactcaacttcc[T/C]tttagctggggccccaaagtgctg
- ASB in cell types
- germinal center B-cells MDM(monocyte derived macrophages) neutrophils from periferal blood GM12878 (female B-cells lymphoblastoid cell line)
- ASB for transcription factors
- BCL6_HUMAN SPI1_HUMAN NCOR2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| BCL6_HUMAN | -0.10 | 3.40 | 2.07 | n/a | No Hit | |||
| SPI1_HUMAN | 0.51 | 2.33 | 1.48 | -1.03 | Weak Discordant | |||
| NCOR2_HUMAN | n/a | 3.94 | 3.00 | n/a | n/a | |||
| RAD21_HUMAN | 3.26 | -0.50 | 1.50 | n/a | n/a | |||
| MEF2B_HUMAN | 0.39 | 2.74 | 1.43 | n/a | No Hit |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), body mass index (bmi), ldl cholesterol, years of education