rs6465970 chr7:78040379 G>A
- Sequence
gggaaggaggacgggcgccccctg[G/A]cggcccctggtcgtgccgcagcct
- ASB in cell types
- THP-1 (acute monocytic leukemia) T47D (invasive ductal carcinoma) MCF7 (Invasive ductal breast carcinoma) HT1080 (fibrosarcoma)
- ASB for transcription factors
- CTCF_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.60 | 0.20 | 1.27 | -7.26 | Concordant | |||
| KDM5B_HUMAN | 2.81 | n/a | 1.50 | n/a | n/a |
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Motif analysis
