rs6472242 chr8:65998378 T>G
- Sequence
ttcagctatgccctgcccctagtg[T/G]tggtgtctacagaggcaggcaggc
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) HCT-116 (colon carcinoma) IMR-5 (Neuroblastoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -0.10 | 2.76 | 1.53 | 2.38 | Concordant | |||
| RAD21_HUMAN | -3.73 | 3.44 | 1.17 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Thyroid