rs6472842 chr8:74366222 A>G

Sequence
cgttaaagatagtggcaatttcat[A/G]tatttcatggatacttgagtttgt
ASB in cell types
foreskin keratinocyte GM12878 (female B-cells lymphoblastoid cell line) epidermal keratinocytes
ASB for transcription factors
CTCF_HUMAN FOXA1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.78 0.72 0.010.93 1.38 n/a No Hit
FOXA1_HUMAN 0.79 0.01 0.021.00 1.86 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (geographic atrophy),  bipolar disorder (psychotic symptoms),  body mass index (bmi)
GTEx eQTL Artery_Tibial,  Brain_Cerebellar_Hemisphere,  Brain_Cerebellum,  Brain_Cortex,  Muscle_Skeletal,  Testis

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