rs6475120 chr9:1732880 G>A
- Sequence
tggttacataagagtgccacctac[G/A]ggcaaggggtaatgcatcatggca
- ASB in cell types
- LNCaP C4-2B (prostate carcinoma) foreskin keratinocyte LNCaP (prostate carcinoma) GM18526 (B – cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN STAG2_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.08 | 2.41 | 2.15 | 2.40 | Concordant | |||
| STAG1_HUMAN | -2.34 | 2.64 | 3.44 | n/a | n/a | |||
| RAD21_HUMAN | -0.85 | 2.62 | 1.50 | n/a | n/a | |||
| STAG2_HUMAN | -2.84 | 2.74 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP college completion, ldl cholesterol, obesity with early age of onset (age >2), partial epilepsy, years of education