rs6475313 chr9:19049219 A>C
- Sequence
aaccacacacgtacccctagcaac[A/C]gcaaacccagctgcaacagaacaa
- ASB in cell types
- neutrophils from periferal blood THP-1 (acute monocytic leukemia) HepG2 (hepatoblastoma) LNCaP C4-2B (prostate carcinoma)
- ASB for transcription factors
- STAG1_HUMAN RUNX2_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 0.74 | 0.98 | 1.00 | n/a | n/a | |||
| RUNX2_HUMAN | -3.29 | 2.09 | 1.33 | 5.04 | Concordant | |||
| RAD21_HUMAN | 1.52 | 0.33 | 1.40 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid