rs6477612 chr9:108049271 C>T

Sequence
tcgaaaccacatatgtgactcaca[C/T]gtcattgttataacagtaggaaac
ASB in cell types
HUVEC-C (HUVEC, umbilical vein endothelial cells) T47D (invasive ductal carcinoma)
ASB for transcription factors
TF65_HUMAN GATA3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TF65_HUMAN 2.65 n/a 5.8·10-31.00 3.00 n/a No Hit
GATA3_HUMAN 2.31 0.52 0.030.81 1.67 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP 2 hour glucose,  birth weight,  hdl cholesterol change with statins,  infant head circumference,  obesity with early age of onset (age >2)
GTEx eQTL Testis

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