rs6478539 chr9:98056438 C>T
- Sequence
atgctcctgagagcaggacataga[C/T]tatgccctgcgcaggcagccgtcc
- ASB in cell types
- liver monocytes from periferal blood
- ASB for transcription factors
- HNF4A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HNF4A_HUMAN | 3.32 | n/a | 1.00 | -4.01 | Concordant |
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Motif analysis
Genetic associations
GRASP bipolar disorder, body mass index (bmi), college completion, hdl cholesterol, ldl cholesterol change with statins, obesity (body mass index (bmi)), total cholesterol
GTEx eQTL Adipose_Subcutaneous, Brain_Cerebellum, Brain_Cortex, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Vagina