rs6479002 chr9:100099166 G>A
- Sequence
cggccccggtccactgagtcctct[G/A]cgcgcggggtcctgtgggatagaa
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) adult erythroblasts ESO-26 (Gastroesophageal junction adenocarcinoma)
- ASB for transcription factors
- RBBP5_HUMAN SRF_HUMAN BHE40_HUMAN KLF5_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RBBP5_HUMAN | 2.29 | -2.17 | 4.00 | n/a | n/a | |||
| SRF_HUMAN | -2.24 | 2.50 | 1.00 | n/a | No Hit | |||
| BHE40_HUMAN | -1.82 | 2.33 | 1.00 | n/a | No Hit | |||
| KLF5_HUMAN | -0.45 | 1.65 | 1.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.50 | 0.99 | 1.11 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood