rs6480615 chr10:72297884 C>A
- Sequence
gcacggcctccgcctccgcctgac[C/A]gtcctcggaaacctcccagccgca
- ASB in cell types
- BEAS-2B (bronchial epithelium) MOLT-4 (Adult T acute lymphoblastic leukemia) MDA-MB-231 (breast adenocarcinoma) HT1080 (fibrosarcoma)
- ASB for transcription factors
- GCR_HUMAN JUN_HUMAN SSRP1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GCR_HUMAN | 0.86 | 0.45 | 1.11 | n/a | No Hit | |||
| JUN_HUMAN | 0.33 | 1.22 | 2.00 | n/a | No Hit | |||
| SSRP1_HUMAN | -2.13 | 2.34 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP college completion, microalbuminuria, total cholesterol, triglycerides, waist hip ratio, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood