rs6481490 chr10:27908512 C>G
- Sequence
gggtactcacagcggagaagaagg[C/G]caaacaaaacttaataacctttac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) VCaP (prostate carcinoma) MCF7 WS8 cells 22RV1 (prostate carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN ESR1_HUMAN GATA3_HUMAN TLE3_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | -0.06 | 2.50 | 1.75 | 3.80 | Concordant | |||
| ESR1_HUMAN | -0.03 | 1.90 | 1.68 | n/a | No Hit | |||
| GATA3_HUMAN | -2.32 | 2.47 | 3.88 | n/a | No Hit | |||
| TLE3_HUMAN | -3.23 | 1.98 | 1.50 | n/a | n/a | |||
| ANDR_HUMAN | -0.97 | 2.25 | 2.00 | 2.73 | Concordant |
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Motif analysis
