rs6481590 chr10:29449250 C>T
- Sequence
tgcccctcgccagatgcaaaggtt[C/T]ctcctttgtcgcttccgtatttcc
- ASB in cell types
- RWPE2 HT1080 (fibrosarcoma) CTV-1 (Adult T acute lymphoblastic leukemia) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SMCA4_HUMAN SPI1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.91 | 0.35 | 1.76 | n/a | No Hit | |||
| SMCA4_HUMAN | 3.23 | -3.06 | 1.00 | n/a | n/a | |||
| SPI1_HUMAN | 2.33 | -2.17 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Caudate_basal_ganglia, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Testis, Thyroid