rs6481818 chr10:33010428 C>A

Sequence
agccctctgcactcatccaaatac[C/A]tgaactggcttgtttactccttta
ASB in cell types
A549 (lung carcinoma) RMG-1
ASB for transcription factors
EP300_HUMAN ARI1A_HUMAN SP1_HUMAN HTF4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EP300_HUMAN 1.25 -3.06 1.5·10-31.00 2.00 n/a n/a
ARI1A_HUMAN 2.00 -1.46 0.011.00 1.00 n/a n/a
SP1_HUMAN 2.74 -4.97 0.011.00 2.00 n/a No Hit
HTF4_HUMAN 2.67 -4.89 0.021.00 2.00 n/a No Hit
GATA3_HUMAN 1.69 -0.01 0.041.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP depression scale of the revised neo personality inventory,  diastolic blood pressure (dbp),  waist hip ratio
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Lung,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Thyroid,  Whole_Blood

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