rs6482251 chr10:23068131 T>C
- Sequence
cctctgctctcttccttttctctc[T/C]tcctgccgccctctccagtttcct
- ASB in cell types
- K562 (myelogenous leukemia) GM18486 (Lymphoblastoid Cell Lines) GM12878 (female B-cells lymphoblastoid cell line) 2588 (Lymphoblastoid Cell Lines)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN IKZF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.19 | 0.17 | 1.25 | 3.06 | Discordant | |||
| STAG1_HUMAN | 1.08 | -0.03 | 1.33 | n/a | n/a | |||
| IKZF1_HUMAN | 1.84 | -0.22 | 1.83 | n/a | No Hit |
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Motif analysis
