rs6482388 chr10:24384034 T>C
- Sequence
gtgctccccagagagccccggcca[T/C]gagcagggtgtctaccagcacctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) pancreas foreskin keratinocyte MDA-MB-231p27CK-DD (breast cancer cells, phosphimimetic p27 cell line)
- ASB for transcription factors
- CTCF_HUMAN BHE40_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.57 | 1.15 | 1.15 | n/a | No Hit | |||
| BHE40_HUMAN | -2.35 | 1.15 | 1.33 | 3.20 | Concordant |
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Motif analysis
