rs6485427 chr11:12066431 G>A

Sequence
caagttctgaataccaggaggtgg[G/A]ggtcattggggaccgtattagaag
ASB in cell types
HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) HUVEC-C (HUVEC, umbilical vein endothelial cells) gastroesophageal sphincter
ASB for transcription factors
ESR1_HUMAN TF65_HUMAN REQU_HUMAN SMRC1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ESR1_HUMAN -5.49 2.86 1.003.6·10-4 2.00 n/a No Hit
TF65_HUMAN -0.33 3.08 0.999.9·10-4 2.25 n/a No Hit
REQU_HUMAN n/a 3.35 1.002.3·10-3 2.00 n/a n/a
SMRC1_HUMAN 0.11 2.44 1.002.6·10-3 1.50 n/a n/a
ZN629_HUMAN -2.55 2.79 1.005.7·10-3 1.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg

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