rs6485806 chr11:48081254 C>T

Sequence
gagccgccaagtgccccctcctgc[C/T]ggcgacaggtccggatgtgggcca
ASB in cell types
CD14+ monocytes MDM(monocyte derived macrophages) T47D (invasive ductal carcinoma)
ASB for transcription factors
SPI1_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SPI1_HUMAN -0.35 2.51 1.002.5·10-3 2.33 n/a No Hit
STAT1_HUMAN n/a 2.91 1.005.3·10-3 3.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Brain_Cortex,  Brain_Hippocampus,  Breast_Mammary_Tissue,  Colon_Sigmoid,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Heart_Left_Ventricle,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Testis,  Whole_Blood

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