rs6486429 chr11:9566006 A>T
- Sequence
gaaactagttcatccttaccagta[A/T]ttttttttttcttgtatacactcc
- ASB in cell types
- K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney) GM12878 (female B-cells lymphoblastoid cell line) renal cortex
- ASB for transcription factors
- CREB1_HUMAN SMCA4_HUMAN LMBL2_HUMAN HDAC1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | -3.01 | 3.06 | 1.00 | n/a | No Hit | |||
| SMCA4_HUMAN | 0.10 | 3.43 | 1.12 | n/a | n/a | |||
| LMBL2_HUMAN | n/a | 3.35 | 2.00 | n/a | n/a | |||
| HDAC1_HUMAN | n/a | 3.39 | 2.00 | n/a | n/a | |||
| GCR_HUMAN | -3.08 | 2.44 | 1.25 | n/a | No Hit |
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