rs6488590 chr12:13135912 G>C
- Sequence
agctcctccgggcacccacgcctc[G/C]ctgcggactggctgaggagtgact
- ASB in cell types
- thyroid gland foreskin keratinocyte HCT-116 (colon carcinoma) epithelial cell of prostate
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN ESR1_HUMAN SMC1A_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | -1.83 | 2.82 | 1.50 | 3.60 | Concordant | |||
| RAD21_HUMAN | -0.14 | 2.77 | 1.17 | n/a | n/a | |||
| ESR1_HUMAN | 0.49 | 2.21 | 1.94 | n/a | No Hit | |||
| SMC1A_HUMAN | -1.49 | 1.57 | 1.67 | n/a | n/a | |||
| STAG2_HUMAN | -2.02 | 2.46 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Esophagus_Mucosa, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Thyroid