rs6488950 chr12:124869557 C>T

Sequence
gacttgccacacacatgaccacta[C/T]gctgtttgctgagggaaaggaaaa
ASB in cell types
K562 (myelogenous leukemia) monocytes from periferal blood MCF10A (breast epithelial cells)
ASB for transcription factors
SRBP2_HUMAN KDM1A_HUMAN ZN316_HUMAN TEAD4_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SRBP2_HUMAN 3.15 n/a 6.0·10-41.00 3.00 n/a No Hit
KDM1A_HUMAN -1.55 2.85 1.007.7·10-4 2.00 n/a n/a
ZN316_HUMAN -2.21 2.40 1.003.2·10-3 2.00 n/a n/a
TEAD4_HUMAN 2.77 -2.43 6.2·10-31.00 1.00 n/a No Hit
IKZF1_HUMAN n/a 1.26 1.007.9·10-3 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP alzheimers disease with psychotic symptoms (alzheimers disease with psychotic symptoms v. controls),  birth weight,  hdl cholesterol,  ldl cholesterol,  obsessive-compulsive disorder (ocd)

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