rs6489721 chr12:6534150 T>C
- Sequence
ggctccaattccccatctcagtcg[T/C]tcccaaagtcctcctgtttcatcc
- ASB in cell types
- HEK293 (embryonic kidney) primary B-CLL cells 22RV1 (prostate carcinoma) EA.hy 926 (human umbilical vein endothelial cell line)
- ASB for transcription factors
- ANDR_HUMAN RELB_HUMAN BRD4_HUMAN TYY1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 2.15 | -0.97 | 2.00 | n/a | No Hit | |||
| RELB_HUMAN | 2.16 | -1.83 | 1.00 | n/a | No Hit | |||
| BRD4_HUMAN | 1.32 | 0.44 | 1.00 | n/a | n/a | |||
| TYY1_HUMAN | 1.12 | 0.10 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid, Whole_Blood