rs6490266 chr12:119667935 C>A
- Sequence
ccacctccacgccctaggccgggc[C/A]gacttacggagtcgccggaagcgg
- ASB in cell types
- HEK293 (embryonic kidney) foreskin keratinocyte CD14+ monocytes CTV-1 (Adult T acute lymphoblastic leukemia)
- ASB for transcription factors
- STAT1_HUMAN GABPA_HUMAN ZFX_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAT1_HUMAN | 1.57 | n/a | 3.00 | n/a | No Hit | |||
| GABPA_HUMAN | -0.33 | 1.05 | 1.50 | n/a | No Hit | |||
| ZFX_HUMAN | 1.34 | -0.39 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Artery_Aorta, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Mucosa, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Testis, Thyroid, Whole_Blood