ADASTRA v5.1.3
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rs6491544
chr13:100098954
T
>
C
Sequence
gggcatgggctctgttacaatgca[T/C]gatgaaataccgtgtcataataca
ASB in cell types
HT29 (colon adenocarcinoma)
ASB for transcription factors
PPARG_HUMAN
NR1H3_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
PPARG_HUMAN
2.15
-1.75
2.7·10
-3
1.00
2.00
n/a
No Hit
NR1H3_HUMAN
2.56
-4.79
0.03
1.00
2.00
n/a
No Hit
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
bipolar disorder
,
bipolar disorder and schizophrenia
,
fasting insulin
,
homa-b
,
homa-ir
,
myopia
,
neuroticism
,
schizophrenia
,
severe diabetic retinopathy
,
waist hip ratio
GTEx eQTL
Cells_Cultured_fibroblasts
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Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)