rs6494611 chr15:66851514 G>A
- Sequence
tctaaactttttatgatggagaac[G/A]gtaaacgtatacaaatgtagtgag
- ASB in cell types
- SK-N-SH (neuroblastoma) K562 (myelogenous leukemia) A549 (lung carcinoma)
- ASB for transcription factors
- SMC3_HUMAN ILF3_HUMAN CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.23 | -0.02 | 1.14 | n/a | n/a | |||
| ILF3_HUMAN | -1.30 | 2.47 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 1.31 | 0.63 | 1.28 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP aortic valve calcium, comorbid depressive syndrome and alcohol dependence, neuroblastoma (brain cancer)