rs6495841 chr15:36579037 C>G
- Sequence
cgaaagtgctgggattacaggcgt[C/G]agccaccgcgcccggccaaaagtg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM12891 (male B- cells lymphoblastoid cell line) SK-MEL-147 (melanoma) GM19238 (female B-cells lymphoblastoid cell lines)
- ASB for transcription factors
- STAG1_HUMAN CREB1_HUMAN BRD2_HUMAN FOXK2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| STAG1_HUMAN | 2.06 | -0.81 | 1.00 | n/a | n/a | |||
| CREB1_HUMAN | 2.44 | -1.21 | 1.67 | -4.58 | Concordant | |||
| BRD2_HUMAN | 2.54 | -2.26 | 1.00 | n/a | n/a | |||
| FOXK2_HUMAN | 2.21 | -1.68 | 1.00 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Brain_Cerebellar_Hemisphere, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Heart_Left_Ventricle, Nerve_Tibial, Thyroid, Whole_Blood