rs6497206 chr15:85485994 A>G
- Sequence
cttgagagttaatttagtcagggt[A/G]atagtatgcatgtatgaaacaaat
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) GM18486 (Lymphoblastoid Cell Lines) GM02255 (Lymphoblastoid Cell Lines) foreskin keratinocyte
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
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-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.89 | -0.21 | 1.64 | n/a | No Hit | |||
| STAG1_HUMAN | 1.11 | -0.61 | 1.10 | n/a | n/a | |||
| RAD21_HUMAN | 1.46 | -0.29 | 1.20 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid