rs6497208 chr15:85486104 C>T
- Sequence
agtgtggagatcctcctactgcca[C/T]tgtgatttaccttatgttgccact
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) MCF7 (Invasive ductal breast carcinoma) K562 (myelogenous leukemia)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN SMC1A_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 2.07 | 2.37 | 1.44 | n/a | No Hit | |||
| RAD21_HUMAN | 2.52 | 1.41 | 1.24 | n/a | n/a | |||
| SMC3_HUMAN | 2.63 | -0.13 | 1.27 | n/a | n/a | |||
| SMC1A_HUMAN | 3.56 | n/a | 1.00 | n/a | n/a | |||
| STAG1_HUMAN | 0.52 | -0.26 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP maternal transmission distortion, neuroticism, paternal transmission distortion, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Frontal_Cortex_BA9, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Thyroid