rs6497366 chr16:19400956 T>G
- Sequence
ggcgcagtaggtggcactgtttct[T/G]cagtaggtggaactgtttctttca
- ASB in cell types
- GM02255 (Lymphoblastoid Cell Lines) HCT-116 (colon carcinoma) EOL-1 (Acute myeloid leukemia) MS-1 (Small cell lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN STAG1_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.81 | 0.30 | 1.34 | -0.10 | Weak Concordant | |||
| STAG1_HUMAN | 2.26 | -0.16 | 1.20 | n/a | n/a | |||
| RAD21_HUMAN | 1.99 | -0.54 | 1.33 | n/a | n/a |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Lung, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Thyroid, Whole_Blood