rs6498136 chr16:10942439 G>A

Sequence
cgcaggcccagcacccatggctgc[G/A]gccgccgcgtagccctcccggtgg
ASB in cell types
GM02610 (Lymphoblastoid Cell Lines) GM02630 (Fanconi anemi) MOLT-4 (Adult T acute lymphoblastic leukemia)
ASB for transcription factors
CTCF_HUMAN NELFA_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 0.76 1.34 1.006.0·10-6 1.52 n/a No Hit
NELFA_HUMAN 2.25 n/a 7.7·10-31.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Breast_Mammary_Tissue,  Esophagus_Mucosa,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Skin_Not_Sun_Exposed_Suprapubic,  Testis,  Thyroid

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