rs6500703 chr16:2907038 G>A

Sequence
agacggttaggtctccggataact[G/A]tgggcaagcctgactgatgtcagg
ASB in cell types
epithelial cell of prostate 2588 (Lymphoblastoid Cell Lines) GM19099 (female B-cells Lymphoblastoid Cell Lines) glioblastoma cells
ASB for transcription factors
CTCF_HUMAN STAG1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN 2.21 -0.81 1.0·10-151.00 2.11 n/a No Hit
STAG1_HUMAN 1.36 -1.21 0.041.00 1.11 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous Colon_Sigmoid Lung Stomach Thyroid Whole_Blood

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