rs6501732 chr17:74707288 C>T

Sequence
taaggaactcaaacaaatcagtaa[C/T]aagaaaacaaataatctaattaaa
ASB in cell types
LNCaP (prostate carcinoma)
ASB for transcription factors
FOXA1_HUMAN ANDR_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA1_HUMAN 0.87 -0.07 1.3·10-41.00 1.54 2.80 Discordant
ANDR_HUMAN 1.43 -0.17 7.7·10-31.00 1.49 n/a No Hit
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Motif analysis

FOXA1_HUMAN Discordant
FOXA1_HUMAN pic

Genetic associations

GRASP infant head circumference,  longstanding arthritis,  total cholesterol,  triglycerides,  triglycerides change with statins,  years of education
GTEx eQTL Colon_Transverse,  Nerve_Tibial,  Testis,  Whole_Blood

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