rs6501757 chr17:75078017 A>G
- Sequence
ccaggctggtcttggccgcttggc[A/G]ctggggcctgtgccaaaggccttg
- ASB in cell types
- HCT-116 (colon carcinoma) MCF7 (Invasive ductal breast carcinoma) GM12878 (female B-cells lymphoblastoid cell line) GM18505 (female B-cells Lymphoblastoid Cell Lines)
- ASB for transcription factors
- ZFX_HUMAN MBD4_HUMAN CTCF_HUMAN ELF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 0.56 | 3.10 | 2.10 | n/a | No Hit | |||
| MBD4_HUMAN | -0.78 | 2.29 | 2.00 | n/a | n/a | |||
| CTCF_HUMAN | 0.21 | 1.14 | 1.19 | n/a | No Hit | |||
| ELF1_HUMAN | 2.74 | n/a | 1.00 | n/a | No Hit | |||
| P53_HUMAN | -5.64 | 3.30 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood