rs6502829 chr17:4903870 T>A
- Sequence
ttgatgttcctttttaaaaaaaat[T/A]tttttgagaccaagtctcgctctg
- ASB in cell types
- foreskin keratinocyte adrenal gland GM12878 (female B-cells lymphoblastoid cell line) neutrophils from periferal blood
- ASB for transcription factors
- CTCF_HUMAN BHE40_HUMAN IKZF2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.16 | 0.63 | 1.22 | n/a | No Hit | |||
| BHE40_HUMAN | 3.28 | -0.12 | 2.50 | n/a | No Hit | |||
| IKZF2_HUMAN | 1.59 | -1.02 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Whole_Blood