rs6504055 chr17:61575074 T>C

Sequence
tctgcagccaggactttccatatg[T/C]tttgataatctgaacaaatactga
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line) A549 (lung carcinoma) pancreas
ASB for transcription factors
TRI22_HUMAN FOXA1_HUMAN CREB1_HUMAN ZNF24_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TRI22_HUMAN n/a 2.89 1.002.7·10-9 6.00 n/a n/a
FOXA1_HUMAN n/a 3.63 1.003.3·10-8 4.67 n/a No Hit
CREB1_HUMAN n/a 2.92 1.006.3·10-6 6.00 n/a No Hit
ZNF24_HUMAN n/a 2.91 1.003.5·10-5 6.00 n/a n/a
HCFC1_HUMAN n/a 2.57 1.002.3·10-4 6.00 n/a n/a
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Motif analysis

NDF1_HUMAN Weak Discordant
NDF1_HUMAN pic

Genetic associations

GRASP 2 hour glucose,  height
GTEx eQTL Adipose_Visceral_Omentum,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Stomach

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