rs6504084 chr17:62111080 G>A

Sequence
ctttctgccacttgtaatgtaaga[G/A]ccctactaaaacaggaaagaagta
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) MCF7L-P(immortalized breast epithelial cell line)
ASB for transcription factors
ZBT40_HUMAN RFX1_HUMAN FOXA1_HUMAN FOS_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZBT40_HUMAN 2.62 n/a 8.1·10-51.00 3.00 n/a n/a
RFX1_HUMAN 3.35 n/a 2.3·10-41.00 3.00 n/a No Hit
FOXA1_HUMAN 3.30 n/a 3.8·10-41.00 2.00 n/a No Hit
FOS_HUMAN 2.67 n/a 6.1·10-41.00 3.00 n/a n/a
NFXL1_HUMAN 2.53 n/a 1.8·10-31.00 4.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol,  total cholesterol,  triglycerides
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Esophagus_Mucosa,  Lung,  Nerve_Tibial,  Skin_Sun_Exposed_Lower_leg,  Spleen,  Stomach,  Thyroid

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