rs6504407 chr17:66275871 A>C

Sequence
gattgtgtgatgccacagtgactc[A/C]ctgtgcccaaggtcccccactcta
ASB in cell types
K562 (myelogenous leukemia) TTC-1240 (Rhabdoid tumor of the kidney) HKC8 (kidney proximal tubule cell line) T47D (invasive ductal carcinoma)
ASB for transcription factors
ATF3_HUMAN SMCA4_HUMAN ARI1B_HUMAN E2F8_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ATF3_HUMAN 3.51 n/a 1.2·10-91.00 2.00 n/a No Hit
SMCA4_HUMAN 2.64 -0.45 2.0·10-81.00 1.36 n/a n/a
ARI1B_HUMAN 2.96 n/a 1.1·10-71.00 2.00 n/a n/a
E2F8_HUMAN 1.73 -0.69 1.0·10-31.00 1.00 n/a n/a
EPAS1_HUMAN 1.49 -0.30 2.0·10-31.00 1.12 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP ldl cholesterol change with statins,  triglycerides,  triglycerides change with statins
GTEx eQTL Adrenal_Gland,  Artery_Aorta,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Thyroid

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