rs6504573 chr17:68019847 T>C

Sequence
cgatagctgccaagaaccatctct[T/C]aatcaactgtccaatgatcgccct
ASB in cell types
GM12878 (female B-cells lymphoblastoid cell line) SK-N-SH (neuroblastoma)
ASB for transcription factors
TBP_HUMAN PBX3_HUMAN FOXK2_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TBP_HUMAN 0.65 0.01 6.6·10-31.00 1.11 n/a No Hit
PBX3_HUMAN -0.67 2.71 1.000.01 2.00 n/a No Hit
FOXK2_HUMAN -3.66 2.17 1.000.01 1.50 n/a n/a
STAT1_HUMAN 0.60 2.41 0.560.02 1.57 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Tibial,  Brain_Cerebellum,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Liver,  Lung,  Nerve_Tibial,  Ovary,  Pancreas,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Testis,  Thyroid,  Uterus,  Whole_Blood

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