rs6504999 chr17:55842980 C>G
- Sequence
acaaataaaaagtaattatttact[C/G]tttgtaagagagtgttctaaaccc
- ASB in cell types
- LNCaP (prostate carcinoma) 22RV1 (prostate carcinoma)
- ASB for transcription factors
- ANDR_HUMAN FOXA1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ANDR_HUMAN | 1.16 | 0.17 | 1.49 | 3.36 | Discordant | |||
| FOXA1_HUMAN | 0.99 | -0.03 | 1.49 | -1.39 | Weak Concordant |
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Motif analysis
