rs6506689 chr18:9743053 T>G

Sequence
tggacttgtccatttagaaagcag[T/G]gtaaacaggctctgaaatgccatt
ASB for transcription factors
FOXA2_HUMAN ESR1_HUMAN
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View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (T) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN 1.67 -2.90 0.021.00 1.50 -3.01 Concordant
ESR1_HUMAN 2.34 n/a 0.041.00 2.00 n/a No Hit
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Motif analysis

FOXA2_HUMAN Concordant
FOXA2_HUMAN pic

Genetic associations

GRASP childhood acute lymphoblastic leukemia,  irritible bowel syndrome,  salmonella-induced pyroptosis,  spine bone mineral density (bmd)

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