rs6507465 chr18:42243046 G>T
- Sequence
ctttgtgcttcacattacacagtt[G/T]gaacgtcatcttgatgttataaaa
- ASB in cell types
- HepG2 (hepatoblastoma) ICN12 (primary pre-B acute lymphomablastic leukemia)
- ASB for transcription factors
- RXRB_HUMAN PBX1_HUMAN CREB1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| RXRB_HUMAN | 2.56 | n/a | 1.00 | n/a | No Hit | |||
| PBX1_HUMAN | 2.38 | -1.98 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 1.74 | -1.52 | 1.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP body mass index (bmi), college completion, ldl cholesterol change with statins, obesity with early age of onset (age >2)