rs6509034 chr19:42857449 G>C
- Sequence
ggcatcccctaggaaggctccagg[G/C]tgggagggactctgtcgccctctg
- ASB in cell types
- GM12878 (female B-cells lymphoblastoid cell line) GM18951 (B-cells Lymphoblastoid Cell Lines) HMEC (human mammary epithelial cells) HCT-116 (colon carcinoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.90 | 0.44 | 2.32 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Visceral_Omentum, Brain_Amygdala, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood