rs6509214 chr19:45478557 G>T

Sequence
gcgcctcccgggcaacaagcaaaa[G/T]aagtccggttcgataagtaagatt
ASB in cell types
MCF7 (Invasive ductal breast carcinoma) WA09 (embryonic stem cells) HeLa Kyoto (cervical adenocarcinoma) CD14+ monocytes
ASB for transcription factors
RFX1_HUMAN RAD21_HUMAN STAT1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RFX1_HUMAN 2.37 n/a 8.9·10-71.00 3.00 n/a No Hit
RAD21_HUMAN 1.43 0.25 2.8·10-31.00 1.52 n/a n/a
STAT1_HUMAN 1.57 -0.65 3.5·10-31.00 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP aortic valve calcium,  hdl cholesterol change with statins,  simpson-angus scale
GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Aorta,  Artery_Coronary,  Artery_Tibial,  Brain_Anterior_cingulate_cortex_BA24,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Minor_Salivary_Gland,  Muscle_Skeletal,  Nerve_Tibial,  Prostate,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Stomach,  Thyroid,  Whole_Blood

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