rs6509244 chr19:45927753 T>G
- Sequence
agagagagagggcgtgcaaccacg[T/G]ggaggaggtgtggcgcctctcaac
- ASB in cell types
- HEK293 (embryonic kidney) GM19240 (B cells Lymphoblastoid Cell Lines) GM12891 (male B- cells lymphoblastoid cell line) GM02630 (Fanconi anemi)
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN MAX_HUMAN STAG1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.17 | 1.65 | 1.41 | 0.72 | Weak Concordant | |||
| RAD21_HUMAN | -1.63 | 2.11 | 1.00 | n/a | n/a | |||
| MAX_HUMAN | 1.91 | -0.06 | 1.00 | -8.58 | Concordant | |||
| STAG1_HUMAN | -0.20 | 1.84 | 1.39 | n/a | n/a | |||
| USF1_HUMAN | 1.35 | -1.09 | 1.00 | -3.86 | Concordant |
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Motif analysis
