rs6509294 chr19:46820127 A>G
- Sequence
cagagaacagggagctggtgagtc[A/G]tggtgaagatgttgtcttttagtg
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) macrophages form periferal blood
- ASB for transcription factors
- HIC1_HUMAN ATF2_HUMAN ATF7_HUMAN KLF17_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HIC1_HUMAN | 3.92 | -3.58 | 1.00 | n/a | No Hit | |||
| ATF2_HUMAN | 1.48 | -2.41 | 1.75 | n/a | No Hit | |||
| ATF7_HUMAN | 2.65 | n/a | 2.00 | n/a | n/a | |||
| KLF17_HUMAN | 3.56 | -3.35 | 1.00 | n/a | n/a | |||
| SMCE1_HUMAN | 3.76 | n/a | 2.00 | n/a | n/a |
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Motif analysis
