ADASTRA v5.1.3
Search
Browse
Annotate
Help
Downloads
About
rs6509542
chr19:29662928
T
>
C
Sequence
ttggagcgccattcagatccatag[T/C]tggaaggaaggacagaagaggaga
ASB in cell types
HEK293 (embryonic kidney)
HCASMC (Human coronary artery smooth muscle cells)
ASB for transcription factors
TCF21_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
0.05
FDR threshold
0
ES threshold
Color scale
-log10 FDR of Ref (
T
) ASB
-log10 FDR of Alt (
C
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
Reset
hidden submit
Filter
Get TSV
Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
TCF21_HUMAN
n/a
1.64
1.00
5.3·10
-5
2.00
n/a
n/a
Items per page:
5
1 – 1 of 1
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
age at death with kuru exposure
,
alzheimers disease
,
amyotrophic lateral sclerosis (als) age of onset
,
parkinsons disease
,
refractive error
GTEx eQTL
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
Download
Download page in JSON
Generated by ADASTRA database
2022.05.19 v5.1.3 Bill Cipher
Please enable JavaScript to continue using this application.
Switch release
SNP set annotation with ANANASTRA
Sort
+/-100bp
log2-scale
log2(Alt/Ref motif p-value)