rs6509679 chr19:52692536 C>T

Sequence
ccgggttcaagcagttctcctgcc[C/T]cagtcagccaggtagctgcgatta
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MTG16_HUMAN SOX6_HUMAN HDAC2_HUMAN KDM1A_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MTG16_HUMAN n/a 0.52 1.005.7·10-3 2.00 n/a n/a
SOX6_HUMAN -5.17 2.99 1.000.01 2.00 n/a n/a
HDAC2_HUMAN -0.81 1.40 0.970.03 2.00 n/a n/a
KDM1A_HUMAN n/a 0.85 1.000.04 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adipose_Subcutaneous,  Adipose_Visceral_Omentum,  Artery_Tibial,  Breast_Mammary_Tissue,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Mucosa,  Esophagus_Muscularis,  Heart_Atrial_Appendage,  Lung,  Muscle_Skeletal,  Nerve_Tibial,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Small_Intestine_Terminal_Ileum,  Testis,  Thyroid

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