rs6510596 chr19:1099507 G>T

Sequence
gggaggagaatcgcttgaacctgg[G/T]aggtggaggttgcagtgagccgag
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
MAFG_HUMAN EMSY_HUMAN ARI1B_HUMAN NFE2_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
MAFG_HUMAN n/a 1.24 1.001.8·10-3 2.00 n/a No Hit
EMSY_HUMAN n/a 1.59 1.005.5·10-3 2.00 n/a n/a
ARI1B_HUMAN n/a 1.83 1.006.9·10-3 2.00 n/a n/a
NFE2_HUMAN n/a 0.99 1.000.04 2.00 n/a No Hit
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Motif analysis

No data available

Genetic associations

GTEx eQTL Adrenal_Gland,  Artery_Tibial,  Cells_Cultured_fibroblasts,  Colon_Sigmoid,  Colon_Transverse,  Esophagus_Gastroesophageal_Junction,  Esophagus_Mucosa,  Esophagus_Muscularis,  Muscle_Skeletal,  Nerve_Tibial,  Ovary,  Pancreas,  Pituitary,  Skin_Not_Sun_Exposed_Suprapubic,  Skin_Sun_Exposed_Lower_leg,  Stomach,  Thyroid,  Whole_Blood

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