rs6511291 chr19:21767600 T>C
- Sequence
agaccccgccaaacccggaagccg[T/C]ccagtccgctccagctgcatgcct
- ASB in cell types
- GM01310 ( Transformed lymphovlasoid cell line ) MCF7 (Invasive ductal breast carcinoma) BEAS-2B (bronchial epithelium) MCF10A (breast epithelial cells)
- ASB for transcription factors
- AHR_HUMAN LIN9_HUMAN PKNX1_HUMAN GCR_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| AHR_HUMAN | -2.05 | 2.60 | 1.00 | n/a | No Hit | |||
| LIN9_HUMAN | -2.77 | 1.82 | 1.50 | n/a | n/a | |||
| PKNX1_HUMAN | -0.01 | 0.94 | 1.75 | n/a | No Hit | |||
| GCR_HUMAN | 0.48 | 1.29 | 1.00 | n/a | No Hit | |||
| E2F1_HUMAN | -0.36 | 1.70 | 1.33 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Brain_Substantia_nigra, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Uterus, Vagina, Whole_Blood